Synopsys: save_format_xyz(outputfile,x,y,z,atom_symbol)
This command save the x, y and z coordinates of a molecular system, so to be visualized by molecular viewer such as jmol, avogadro etc.
To this purpose, coordinates are saved in Angstrom.
If N is the number of atoms, as inputs:
- outputfile (string): the name of the output file
- x (array of double long N): the x coordinates of the atoms expressed in nm
- y (array of double long N): the y coordinates of the atoms expressed in nm
- z (array of double long N): the z coordinates of the atoms expressed in nm
- atom_symbol (string): the atom symbol